chore(package): migrate to src/ layout (#3920)

Migrates package structure to src/ layout following Python packaging
best practices.

All code moved from `llama_stack/` to `src/llama_stack/`. Public API
unchanged - imports remain `import llama_stack.*`.

Updated build configs, pre-commit hooks, scripts, and GitHub workflows
accordingly. All hooks pass, package builds cleanly.

**Developer note**: Reinstall after pulling: `pip install -e .`

src/llama_stack/distributions/meta-reference-gpu/build.yaml

@@ -0,0 +1,32 @@
+version: 2
+distribution_spec:
+  description: Use Meta Reference for running LLM inference
+  providers:
+    inference:
+    - provider_type: inline::meta-reference
+    vector_io:
+    - provider_type: inline::faiss
+    - provider_type: remote::chromadb
+    - provider_type: remote::pgvector
+    safety:
+    - provider_type: inline::llama-guard
+    agents:
+    - provider_type: inline::meta-reference
+    eval:
+    - provider_type: inline::meta-reference
+    datasetio:
+    - provider_type: remote::huggingface
+    - provider_type: inline::localfs
+    scoring:
+    - provider_type: inline::basic
+    - provider_type: inline::llm-as-judge
+    - provider_type: inline::braintrust
+    tool_runtime:
+    - provider_type: remote::brave-search
+    - provider_type: remote::tavily-search
+    - provider_type: inline::rag-runtime
+    - provider_type: remote::model-context-protocol
+image_type: venv
+additional_pip_packages:
+- aiosqlite
+- sqlalchemy[asyncio]