diff --git a/llama_stack/providers/inline/tool_runtime/rag/memory.py b/llama_stack/providers/inline/tool_runtime/rag/memory.py
index a1543457b..ebdd7ad93 100644
--- a/llama_stack/providers/inline/tool_runtime/rag/memory.py
+++ b/llama_stack/providers/inline/tool_runtime/rag/memory.py
@@ -131,8 +131,18 @@ class MemoryToolRuntimeImpl(ToolGroupsProtocolPrivate, ToolRuntime, RAGToolRunti
             for vector_db_id in vector_db_ids
         ]
         results: list[QueryChunksResponse] = await asyncio.gather(*tasks)
-        chunks = [c for r in results for c in r.chunks]
-        scores = [s for r in results for s in r.scores]
+
+        chunks = []
+        scores = []
+
+        for vector_db_id, result in zip(vector_db_ids, results, strict=False):
+            for chunk, score in zip(result.chunks, result.scores, strict=False):
+                if not hasattr(chunk, "metadata") or chunk.metadata is None:
+                    chunk.metadata = {}
+                chunk.metadata["vector_db_id"] = vector_db_id
+
+                chunks.append(chunk)
+                scores.append(score)
 
         if not chunks:
             return RAGQueryResult(content=None)
diff --git a/tests/unit/rag/test_rag_query.py b/tests/unit/rag/test_rag_query.py
index 05ccecb99..3ce0c5f55 100644
--- a/tests/unit/rag/test_rag_query.py
+++ b/tests/unit/rag/test_rag_query.py
@@ -54,9 +54,7 @@ class TestRagQuery:
         result = await rag_tool.query(content=content, vector_db_ids=vector_db_ids)
 
         assert result is not None
-        expected_metadata_string = (
-            "Metadata: {'chunk_id': 'chunk1', 'document_id': 'doc1', 'source': 'test_source', 'key1': 'value1'}"
-        )
+        expected_metadata_string = "Metadata: {'chunk_id': 'chunk1', 'document_id': 'doc1', 'source': 'test_source', 'key1': 'value1', 'vector_db_id': 'db1'}"
         assert expected_metadata_string in result.content[1].text
         assert result.content is not None
 
@@ -77,3 +75,71 @@ class TestRagQuery:
         # Test that invalid mode raises an error
         with pytest.raises(ValueError):
             RAGQueryConfig(mode="wrong_mode")
+
+    @pytest.mark.asyncio
+    async def test_query_adds_vector_db_id_to_chunk_metadata(self):
+        rag_tool = MemoryToolRuntimeImpl(
+            config=MagicMock(),
+            vector_io_api=MagicMock(),
+            inference_api=MagicMock(),
+        )
+
+        vector_db_ids = ["db1", "db2"]
+
+        # Fake chunks from each DB
+        chunk_metadata1 = ChunkMetadata(
+            document_id="doc1",
+            chunk_id="chunk1",
+            source="test_source1",
+            metadata_token_count=5,
+        )
+        chunk1 = Chunk(
+            content="chunk from db1",
+            metadata={"vector_db_id": "db1", "document_id": "doc1"},
+            stored_chunk_id="c1",
+            chunk_metadata=chunk_metadata1,
+        )
+
+        chunk_metadata2 = ChunkMetadata(
+            document_id="doc2",
+            chunk_id="chunk2",
+            source="test_source2",
+            metadata_token_count=5,
+        )
+        chunk2 = Chunk(
+            content="chunk from db2",
+            metadata={"vector_db_id": "db2", "document_id": "doc2"},
+            stored_chunk_id="c2",
+            chunk_metadata=chunk_metadata2,
+        )
+
+        rag_tool.vector_io_api.query_chunks = AsyncMock(
+            side_effect=[
+                QueryChunksResponse(chunks=[chunk1], scores=[0.9]),
+                QueryChunksResponse(chunks=[chunk2], scores=[0.8]),
+            ]
+        )
+
+        result = await rag_tool.query(content="test", vector_db_ids=vector_db_ids)
+        returned_chunks = result.metadata["chunks"]
+        returned_scores = result.metadata["scores"]
+        returned_doc_ids = result.metadata["document_ids"]
+
+        assert returned_chunks == ["chunk from db1", "chunk from db2"]
+        assert returned_scores == (0.9, 0.8)
+        assert returned_doc_ids == ["doc1", "doc2"]
+
+        # Parse metadata from query result
+        def parse_metadata(s):
+            import ast
+            import re
+
+            match = re.search(r"Metadata:\s*(\{.*\})", s)
+            if not match:
+                raise ValueError(f"No metadata found in string: {s}")
+            return ast.literal_eval(match.group(1))
+
+        returned_metadata = [
+            parse_metadata(item.text)["vector_db_id"] for item in result.content if "Metadata:" in item.text
+        ]
+        assert returned_metadata == ["db1", "db2"]