llama-stack/llama_stack/providers/inline/vector_io/faiss/faiss.py
Varsha e92301f2d7
feat(sqlite-vec): enable keyword search for sqlite-vec (#1439)
# What does this PR do?
This PR introduces support for keyword based FTS5 search with BM25
relevance scoring. It makes changes to the existing EmbeddingIndex base
class in order to support a search_mode and query_str parameter, that
can be used for keyword based search implementations.

[//]: # (If resolving an issue, uncomment and update the line below)
[//]: # (Closes #[issue-number])

## Test Plan
run 
```
pytest llama_stack/providers/tests/vector_io/test_sqlite_vec.py -v -s --tb=short --disable-warnings --asyncio-mode=auto
```
Output:
```
pytest llama_stack/providers/tests/vector_io/test_sqlite_vec.py -v -s --tb=short --disable-warnings --asyncio-mode=auto
/Users/vnarsing/miniconda3/envs/stack-client/lib/python3.10/site-packages/pytest_asyncio/plugin.py:207: PytestDeprecationWarning: The configuration option "asyncio_default_fixture_loop_scope" is unset.
The event loop scope for asynchronous fixtures will default to the fixture caching scope. Future versions of pytest-asyncio will default the loop scope for asynchronous fixtures to function scope. Set the default fixture loop scope explicitly in order to avoid unexpected behavior in the future. Valid fixture loop scopes are: "function", "class", "module", "package", "session"

  warnings.warn(PytestDeprecationWarning(_DEFAULT_FIXTURE_LOOP_SCOPE_UNSET))
====================================================== test session starts =======================================================
platform darwin -- Python 3.10.16, pytest-8.3.4, pluggy-1.5.0 -- /Users/vnarsing/miniconda3/envs/stack-client/bin/python
cachedir: .pytest_cache
metadata: {'Python': '3.10.16', 'Platform': 'macOS-14.7.4-arm64-arm-64bit', 'Packages': {'pytest': '8.3.4', 'pluggy': '1.5.0'}, 'Plugins': {'html': '4.1.1', 'metadata': '3.1.1', 'asyncio': '0.25.3', 'anyio': '4.8.0'}}
rootdir: /Users/vnarsing/go/src/github/meta-llama/llama-stack
configfile: pyproject.toml
plugins: html-4.1.1, metadata-3.1.1, asyncio-0.25.3, anyio-4.8.0
asyncio: mode=auto, asyncio_default_fixture_loop_scope=None
collected 7 items                                                                                                                

llama_stack/providers/tests/vector_io/test_sqlite_vec.py::test_add_chunks PASSED
llama_stack/providers/tests/vector_io/test_sqlite_vec.py::test_query_chunks_vector PASSED
llama_stack/providers/tests/vector_io/test_sqlite_vec.py::test_query_chunks_fts PASSED
llama_stack/providers/tests/vector_io/test_sqlite_vec.py::test_chunk_id_conflict PASSED
llama_stack/providers/tests/vector_io/test_sqlite_vec.py::test_register_vector_db PASSED
llama_stack/providers/tests/vector_io/test_sqlite_vec.py::test_unregister_vector_db PASSED
llama_stack/providers/tests/vector_io/test_sqlite_vec.py::test_generate_chunk_id PASSED
```


For reference, with the implementation, the fts table looks like below:
```
Chunk ID: 9fbc39ce-c729-64a2-260f-c5ec9bb2a33e, Content: Sentence 0 from document 0
Chunk ID: 94062914-3e23-44cf-1e50-9e25821ba882, Content: Sentence 1 from document 0
Chunk ID: e6cfd559-4641-33ba-6ce1-7038226495eb, Content: Sentence 2 from document 0
Chunk ID: 1383af9b-f1f0-f417-4de5-65fe9456cc20, Content: Sentence 3 from document 0
Chunk ID: 2db19b1a-de14-353b-f4e1-085e8463361c, Content: Sentence 4 from document 0
Chunk ID: 9faf986a-f028-7714-068a-1c795e8f2598, Content: Sentence 5 from document 0
Chunk ID: ef593ead-5a4a-392f-7ad8-471a50f033e8, Content: Sentence 6 from document 0
Chunk ID: e161950f-021f-7300-4d05-3166738b94cf, Content: Sentence 7 from document 0
Chunk ID: 90610fc4-67c1-e740-f043-709c5978867a, Content: Sentence 8 from document 0
Chunk ID: 97712879-6fff-98ad-0558-e9f42e6b81d3, Content: Sentence 9 from document 0
Chunk ID: aea70411-51df-61ba-d2f0-cb2b5972c210, Content: Sentence 0 from document 1
Chunk ID: b678a463-7b84-92b8-abb2-27e9a1977e3c, Content: Sentence 1 from document 1
Chunk ID: 27bd63da-909c-1606-a109-75bdb9479882, Content: Sentence 2 from document 1
Chunk ID: a2ad49ad-f9be-5372-e0c7-7b0221d0b53e, Content: Sentence 3 from document 1
Chunk ID: cac53bcd-1965-082a-c0f4-ceee7323fc70, Content: Sentence 4 from document 1
```

Query results:
Result 1: Sentence 5 from document 0
Result 2: Sentence 5 from document 1
Result 3: Sentence 5 from document 2

[//]: # (## Documentation)

---------

Signed-off-by: Varsha Prasad Narsing <varshaprasad96@gmail.com>
2025-05-21 15:24:24 -04:00

210 lines
7.1 KiB
Python

# Copyright (c) Meta Platforms, Inc. and affiliates.
# All rights reserved.
#
# This source code is licensed under the terms described in the LICENSE file in
# the root directory of this source tree.
import asyncio
import base64
import io
import json
import logging
from typing import Any
import faiss
import numpy as np
from numpy.typing import NDArray
from llama_stack.apis.common.content_types import InterleavedContent
from llama_stack.apis.inference.inference import Inference
from llama_stack.apis.vector_dbs import VectorDB
from llama_stack.apis.vector_io import Chunk, QueryChunksResponse, VectorIO
from llama_stack.providers.datatypes import VectorDBsProtocolPrivate
from llama_stack.providers.utils.kvstore import kvstore_impl
from llama_stack.providers.utils.kvstore.api import KVStore
from llama_stack.providers.utils.memory.vector_store import (
EmbeddingIndex,
VectorDBWithIndex,
)
from .config import FaissVectorIOConfig
logger = logging.getLogger(__name__)
VERSION = "v3"
VECTOR_DBS_PREFIX = f"vector_dbs:{VERSION}::"
FAISS_INDEX_PREFIX = f"faiss_index:{VERSION}::"
class FaissIndex(EmbeddingIndex):
def __init__(self, dimension: int, kvstore: KVStore | None = None, bank_id: str | None = None):
self.index = faiss.IndexFlatL2(dimension)
self.chunk_by_index: dict[int, Chunk] = {}
self.kvstore = kvstore
self.bank_id = bank_id
@classmethod
async def create(cls, dimension: int, kvstore: KVStore | None = None, bank_id: str | None = None):
instance = cls(dimension, kvstore, bank_id)
await instance.initialize()
return instance
async def initialize(self) -> None:
if not self.kvstore:
return
index_key = f"{FAISS_INDEX_PREFIX}{self.bank_id}"
stored_data = await self.kvstore.get(index_key)
if stored_data:
data = json.loads(stored_data)
self.chunk_by_index = {int(k): Chunk.model_validate_json(v) for k, v in data["chunk_by_index"].items()}
buffer = io.BytesIO(base64.b64decode(data["faiss_index"]))
self.index = faiss.deserialize_index(np.loadtxt(buffer, dtype=np.uint8))
async def _save_index(self):
if not self.kvstore or not self.bank_id:
return
np_index = faiss.serialize_index(self.index)
buffer = io.BytesIO()
np.savetxt(buffer, np_index)
data = {
"chunk_by_index": {k: v.model_dump_json() for k, v in self.chunk_by_index.items()},
"faiss_index": base64.b64encode(buffer.getvalue()).decode("utf-8"),
}
index_key = f"{FAISS_INDEX_PREFIX}{self.bank_id}"
await self.kvstore.set(key=index_key, value=json.dumps(data))
async def delete(self):
if not self.kvstore or not self.bank_id:
return
await self.kvstore.delete(f"{FAISS_INDEX_PREFIX}{self.bank_id}")
async def add_chunks(self, chunks: list[Chunk], embeddings: NDArray):
# Add dimension check
embedding_dim = embeddings.shape[1] if len(embeddings.shape) > 1 else embeddings.shape[0]
if embedding_dim != self.index.d:
raise ValueError(f"Embedding dimension mismatch. Expected {self.index.d}, got {embedding_dim}")
indexlen = len(self.chunk_by_index)
for i, chunk in enumerate(chunks):
self.chunk_by_index[indexlen + i] = chunk
self.index.add(np.array(embeddings).astype(np.float32))
# Save updated index
await self._save_index()
async def query_vector(
self,
embedding: NDArray,
k: int,
score_threshold: float,
) -> QueryChunksResponse:
distances, indices = await asyncio.to_thread(self.index.search, embedding.reshape(1, -1).astype(np.float32), k)
chunks = []
scores = []
for d, i in zip(distances[0], indices[0], strict=False):
if i < 0:
continue
chunks.append(self.chunk_by_index[int(i)])
scores.append(1.0 / float(d))
return QueryChunksResponse(chunks=chunks, scores=scores)
async def query_keyword(
self,
query_string: str,
k: int,
score_threshold: float,
) -> QueryChunksResponse:
raise NotImplementedError("Keyword search is not supported in FAISS")
class FaissVectorIOAdapter(VectorIO, VectorDBsProtocolPrivate):
def __init__(self, config: FaissVectorIOConfig, inference_api: Inference) -> None:
self.config = config
self.inference_api = inference_api
self.cache: dict[str, VectorDBWithIndex] = {}
self.kvstore: KVStore | None = None
async def initialize(self) -> None:
self.kvstore = await kvstore_impl(self.config.kvstore)
# Load existing banks from kvstore
start_key = VECTOR_DBS_PREFIX
end_key = f"{VECTOR_DBS_PREFIX}\xff"
stored_vector_dbs = await self.kvstore.values_in_range(start_key, end_key)
for vector_db_data in stored_vector_dbs:
vector_db = VectorDB.model_validate_json(vector_db_data)
index = VectorDBWithIndex(
vector_db,
await FaissIndex.create(vector_db.embedding_dimension, self.kvstore, vector_db.identifier),
self.inference_api,
)
self.cache[vector_db.identifier] = index
async def shutdown(self) -> None:
# Cleanup if needed
pass
async def register_vector_db(
self,
vector_db: VectorDB,
) -> None:
assert self.kvstore is not None
key = f"{VECTOR_DBS_PREFIX}{vector_db.identifier}"
await self.kvstore.set(
key=key,
value=vector_db.model_dump_json(),
)
# Store in cache
self.cache[vector_db.identifier] = VectorDBWithIndex(
vector_db=vector_db,
index=await FaissIndex.create(vector_db.embedding_dimension, self.kvstore, vector_db.identifier),
inference_api=self.inference_api,
)
async def list_vector_dbs(self) -> list[VectorDB]:
return [i.vector_db for i in self.cache.values()]
async def unregister_vector_db(self, vector_db_id: str) -> None:
assert self.kvstore is not None
if vector_db_id not in self.cache:
logger.warning(f"Vector DB {vector_db_id} not found")
return
await self.cache[vector_db_id].index.delete()
del self.cache[vector_db_id]
await self.kvstore.delete(f"{VECTOR_DBS_PREFIX}{vector_db_id}")
async def insert_chunks(
self,
vector_db_id: str,
chunks: list[Chunk],
ttl_seconds: int | None = None,
) -> None:
index = self.cache.get(vector_db_id)
if index is None:
raise ValueError(f"Vector DB {vector_db_id} not found. found: {self.cache.keys()}")
await index.insert_chunks(chunks)
async def query_chunks(
self,
vector_db_id: str,
query: InterleavedContent,
params: dict[str, Any] | None = None,
) -> QueryChunksResponse:
index = self.cache.get(vector_db_id)
if index is None:
raise ValueError(f"Vector DB {vector_db_id} not found")
return await index.query_chunks(query, params)